AutismKB

View SNPs/VNTRs


View by Chromosome: All( 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X  Y  All )


View by Study:Case control( FBAT  Case control  GWAS FBAT  GWAS case control  All  )


View by Results:All( Positive  Mixed  Negative  All  )


View by Function: All( coding-synon  missense  frameshift  intron  near-gene-3  near-gene-5  untranslated-3  untranslated-5  Unknown  All )


With SNP130 annotation: Yes( Yes  No  Both  )



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SNP Name SNP ID Location Function Gene Symbol Gene ID Related Studies Result
FBAT Case Control GWAS FBAT GWAS Case Control
1 rs10951154 AutS003002chr7:27101838 -27101839missense HOXA1AutG31987 7 0 0
2 rs1858830 AutS003175chr7:116099674 -116099675near-gene-5 METAutG42338 5 0 0
3 rs2056202 AutS002947chr2:172420725 -172420726intron SLC25A12AutG860410 1 0 0
4 rs2292813 AutS001264chr2:172352474 -172352475intron SLC25A12AutG86049 1 0 0
5 rs1861972 AutS001439chr7:154946753 -154946754intron EN2AutG20207 2 0 0
6 rs1861973 AutS002752chr7:154946905 -154946906intron EN2AutG20206 2 0 0
7 rs4141463 AutS002502chr20:14695470 -14695471intron MACROD2AutG1407330 5 2 0
8 rs2254298 AutS000320chr3:8777227 -8777228intron OXTRAutG50215 1 0 0
9 rs53576 AutS000176chr3:8779370 -8779371intron OXTRAutG50214 1 0 0
10 rs38845 AutS001168chr7:116109037 -116109038intron METAutG42334 1 0 0
11 rs1801133 AutS002048chr1:11778964 -11778965missense MTHFRAutG45240 5 0 0
12 rs6644635 AutS000216chrY:1693993 -1693994unknown ASMTAutG4381 4 0 0
13 rs6313 AutS001230chr13:46367940 -46367941coding-synon HTR2AAutG33564 1 0 0
14 rs237885 AutS002169chr3:8770542 -8770543intron OXTRAutG50214 1 0 0
15 rs4446909 AutS001777chrY:1693782 -1693783unknown ASMTAutG4381 4 0 0
16 rs5989681 AutS003298chrY:1693891 -1693892unknown ASMTAutG4381 4 0 0
17 rs4760816 AutS001496chr12:70658867 -70658868intron TPH2AutG1212783 1 0 0
18 rs237887 AutS002696chr3:8772041 -8772042intron OXTRAutG50213 1 0 0
19 rs890317 AutS000079chr15:24473293 -24473294intron GABRB3AutG25623 1 0 0
20 rs6311 AutS002459chr13:46369478 -46369479near-gene-5 HTR2AAutG33563 1 0 0
21 rs2268495 AutS001979chr3:8782534 -8782535intron OXTRAutG50213 1 0 0
22 rs2301261 AutS000543chr3:8785895 -8785896intron OXTRAutG50211 1 0 2
23 rs821616 AutS000578chr1:230211220 -230211221missense DISC1AutG271853 1 0 0
24 rs1042778 AutS001980chr3:8769544 -8769545untranslated-3 OXTRAutG50213 1 0 0
25 rs736707 AutS000076chr7:102917638 -102917639intron RELNAutG56493 1 0 0

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Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
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