AutismKB

View SNPs/VNTRs


View by Chromosome: All( 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X  Y  All )


View by Study:All( FBAT  Case control  GWAS FBAT  GWAS case control  All  )


View by Results:All( Positive  Mixed  Negative  All  )


View by Function: All( coding-synon  missense  frameshift  intron  near-gene-3  near-gene-5  untranslated-3  untranslated-5  Unknown  All )


With SNP130 annotation: Yes( Yes  No  Both  )



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SNP Name SNP ID Location Function Gene Symbol Gene ID Related Studies Result
FBAT Case Control GWAS FBAT GWAS Case Control
1 rs10951154 AutS003002chr7:27101838 -27101839missense HOXA1AutG31987 7 0 0
2 rs1858830 AutS003175chr7:116099674 -116099675near-gene-5 METAutG42338 5 0 0
3 rs2056202 AutS002947chr2:172420725 -172420726intron SLC25A12AutG860410 1 0 0
4 rs2292813 AutS001264chr2:172352474 -172352475intron SLC25A12AutG86049 1 0 0
5 rs1861972 AutS001439chr7:154946753 -154946754intron EN2AutG20207 2 0 0
6 rs1861973 AutS002752chr7:154946905 -154946906intron EN2AutG20206 2 0 0
7 rs4141463 AutS002502chr20:14695470 -14695471intron MACROD2AutG1407330 5 2 0
8 rs2020936 AutS000366chr17:25574939 -25574940intron SLC6A4AutG65326 0 0 0
9 rs2020942 AutS001632chr17:25571039 -25571040intron SLC6A4AutG65326 0 0 0
10 rs2254298 AutS000320chr3:8777227 -8777228intron OXTRAutG50215 1 0 0
11 rs3793243 AutS001284chr7:72759282 -72759283intron STX1AAutG68045 0 0 0
12 rs237885 AutS002169chr3:8770542 -8770543intron OXTRAutG50214 1 0 0
13 rs6313 AutS001230chr13:46367940 -46367941coding-synon HTR2AAutG33564 1 0 0
14 rs4446909 AutS001777chrY:1693782 -1693783unknown ASMTAutG4381 4 0 0
15 rs38845 AutS001168chr7:116109037 -116109038intron METAutG42334 1 0 0
16 rs5989681 AutS003298chrY:1693891 -1693892unknown ASMTAutG4381 4 0 0
17 rs4363087 AutS001195chr7:72756131 -72756132intron STX1AAutG68045 0 0 0
18 rs140700 AutS001528chr17:25567514 -25567515intron SLC6A4AutG65325 0 0 0
19 rs6644635 AutS000216chrY:1693993 -1693994unknown ASMTAutG4381 4 0 0
20 rs53576 AutS000176chr3:8779370 -8779371intron OXTRAutG50214 1 0 0
21 rs1801133 AutS002048chr1:11778964 -11778965missense MTHFRAutG45240 5 0 0
22 rs2217262 AutS001186chr7:111583612 -111583613intron DOCK4AutG97320 0 2 2
23 rs2066713 AutS003309chr17:25575790 -25575791intron SLC6A4AutG65324 0 0 0
24 rs140679 AutS000240chr15:25446270 -25446271coding-synon GABRG3AutG25674 0 0 0
25 rs1426217 AutS001389chr15:24372217 -24372218intron GABRB3AutG25624 0 0 0

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Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
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