AutismKB

View SNPs/VNTRs


View by Chromosome: 12( 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X  Y  All )


View by Study:FBAT( FBAT  Case control  GWAS FBAT  GWAS case control  All  )


View by Results:All( Positive  Mixed  Negative  All  )


View by Function: All( coding-synon  missense  frameshift  intron  near-gene-3  near-gene-5  untranslated-3  untranslated-5  Unknown  All )


With SNP130 annotation: Yes( Yes  No  Both  )


SNP Name SNP ID Location Function Gene Symbol Gene ID Related Studies Result
FBAT Case Control GWAS FBAT GWAS Case Control
1 rs4760816 AutS001496chr12:70658867 -70658868intron TPH2AutG1212783 1 0 0
2 rs10784941 AutS000792chr12:70622778 -70622779intron TPH2AutG1212783 0 0 0
3 rs4341581 AutS002155chr12:70621339 -70621340intron TPH2AutG1212781 2 0 0
4 rs1522307 AutS002355chr12:101822646 -101822647intron PAHAutG50532 0 0 0
5 rs1801153 AutS003369chr12:101756895 -101756896untranslated-3 PAHAutG50532 0 0 0
6 rs1386494 AutS002288chr12:70638809 -70638810intron TPH2AutG1212782 0 0 0
7 rs1048230 AutS002875chr12:49672332 -49672333coding-synon CHMP2BAutG259781 1 0 0
8 rs2367895 AutS000828chr12:70907461 -70907462unknown TPH2AutG1212782 0 0 0
9 rs1487280 AutS001962chr12:70705093 -70705094intron TPH2AutG1212782 0 0 0
10 rs10506645 AutS002640chr12:70671766 -70671767intron TPH2AutG1212782 0 0 0
11 rs1007023 AutS002547chr12:70674640 -70674641intron TPH2AutG1212781 1 0 0
12 rs4565946 AutS000510chr12:70623035 -70623036intron TPH2AutG1212781 1 0 0
13 rs2171363 AutS000393chr12:70646530 -70646531intron TPH2AutG1212782 0 0 0
14 rs11179000 AutS003238chr12:70624894 -70624895intron TPH2AutG1212781 1 0 0
15 rs1386492 AutS000278chr12:70648531 -70648532intron TPH2AutG1212782 0 0 0
16 rs1487278 AutS001240chr12:70687117 -70687118intron TPH2AutG1212782 0 0 0
17 rs6253 AutS002189chr12:28007207 -28007208intron,untranslated-3 ARAutG3671 1 0 0
18 rs1048230 AutS001501chr12:49672332 -49672333coding-synon SLC11A2AutG48911 0 0 0
19 rs2293044 AutS000404chr12:116142373 -116142374coding-synon NOS1AutG48421 0 0 0
20 rs12368491 AutS001343chr12:52069225 -52069226intron SP1AutG66671 0 0 0
21 rs1420399 AutS000363chr12:105941311 -105941312intron CRY1AutG14071 0 0 0
22 rs4570625 AutS002342chr12:70618189 -70618190near-gene-5 TPH2AutG1212781 0 0 0
23 rs3741890 AutS001266chr12:105911154 -105911155intron CRY1AutG14071 0 0 0
24 rs9658255 AutS002964chr12:116284138 -116284139near-gene-3 NOS1AutG48421 0 0 0
25 rs3825251 AutS000153chr12:107812112 -107812113intron DAOAutG16101 0 0 0

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Syndromic Genes

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AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
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