AutismKB

Detailed Information for rs2020942

Basic Information
SNP Name:rs2020942
SNP location:chr17:25571039-25571040
Related Gene:SLC6A4
Function:intron
Related Studies Statistic
FBATCase controlGWAS FBATGWAS case control
6 0 0 0
Low Scale Association Studies
Family Based Association Studies: 6 results 
Transmission Disequilibrium Test (TDT)
Results #Informative Families Alele Name Transmitted (frequency) Non-Transmitted (frequency) P valueStudy Information
- G
A
36 ( - )
36 ( - )
36 ( - )
36 ( - )
1Wu,2005_1
  • Ancestral: Asian
  • Country: China
  • Diagnosis criteria: DSM-IV
  • Final diagnosis: ASD
  • Family : Total Family: 175 Simplex Family: 175
  • Affected: All: 175 Women: 14 Age: 6.08 ± 2.97 Age Range: - IQ:61.52 ± 19.77 IQ Range:-
  • Unaffected: All:-
- A
G
179 ( - )
165 ( - )
165 ( - )
179 ( - )
0.45Ramoz,2006_1
  • Ancestral: Caucasian
  • Country: USA, AGRE
  • Diagnosis criteria: ADI-R
  • Final diagnosis: AD
  • Family : Total Family: 352 Simplex Family: 80 Multiplex Family: 272
  • Affected: All: 645 Women: - Age: - Age Range: - IQ:- IQ Range:-
  • Unaffected: All:
- A
G
38 ( - )
70 ( - )
70 ( - )
38 ( - )
0.002Kim,2002_1
  • Ancestral: Caucasian
  • Country: USA
  • Diagnosis criteria: ADI-R, ADOS, DSM-IV
  • Final diagnosis: AD
  • Family : Total Family: 115 Simplex Family: 108 Multiplex Family: 7
  • Affected: All: 115 Women: 17 Age: 7.1 ± 5.2 Age Range: - IQ:77.9 ± 24.5 IQ Range:-
  • Unaffected: All:-
84 A
G
37 ( - )
46 ( - )
46 ( - )
37 ( - )
0.38Conroy,2004_1
  • Ancestral: Caucasian
  • Country: Ireland
  • Diagnosis criteria: ADI-R, ADOS-G
  • Final diagnosis: ASD
  • Family : Total Family: 84
  • Affected: All: - Women: - Age: - Age Range: - IQ:<35 IQ Range:-
  • Unaffected: All:-
- A
G
175 ( - )
291 ( - )
291 ( - )
282 ( - )
0.63McCauley,2004_1
  • Ancestral: Caucasian
  • Country: NEMC, AGRE
  • Diagnosis criteria: ADI, ADI-R, ADOS
  • Final diagnosis: AD
  • Family : Total Family: 137 Multiplex Family: 137
  • Affected: All: - Women: - Age: - Age Range: - IQ:- IQ Range:-
  • Unaffected: All:-
OTHERS
Results Alele 1 Alele 2 Statistic Method P value Study Information
A Gothers -Anderson,2009_1
  • Ancestral: Caucasian
  • Country: USA, AGRE
  • Diagnosis criteria: DSM-IV,ADI-R
  • Final diagnosis: ASD
  • Family : Total Family: 403 Simplex Family: 252 Multiplex Family: 151
  • Affected: All: - Women: - Age: - Age Range: (3-21) IQ:- IQ Range:-
  • Unaffected: All:-
Case-Control Based Association Studies: 0 results 
Genome-Wide Association Studies
Family Based Association Studies: 0 results 
Case-Control Based Association Studies: 0 results 

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  (e.g. NLGN4X)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
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