AutismKB


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Suggested Autism Candidate Gene List

This dataset contains 171 genes.
Using a Core Dataset from review papers, we get a weight matrix.
The comobined score comes from scores from each dataset plus each weight matrix. The higher the score, the more confident the gene is.
Only the genes with total score larger than or equal to 16 (the smallest score of the gene in the core datasset) and level3/level 4 syndromic autism genes are listed below. (More information about the dataset)
Gene ID Gene Symbol Band Evidence Score Total Score
GWAS Expression CNV Linkage Low-Scale Association Other Low-Scale Studies
AutG9037 SEMA5A 5p15.2 2 1 1 0 0 1 22
AutG5728 PTEN 10q23.3 0 0 0 1 0 3 22
AutG2557 GABRA4 4p12 0 0 1 0 2 2 22
AutG114791 TUBGCP5 15q11.2 0 2 3 0 0 2 22
AutG55079 FEZF2 3p14.2 2 1 1 0 0 1 22
AutG27185 DISC1 1q42.1 0 0 1 0 2 2 22
AutG552 AVPR1A 12q14-q15 0 0 1 0 2 2 22
AutG83943 IMMP2L 7q31 2 0 1 1 0 1 22
AutG1008 CDH10 5p14.2 3 1 1 0 0 0 21
AutG8128 ST8SIA2 15q26 3 0 1 1 0 0 21
AutG5613 PRKX Xp22.3 2 0 1 0 0 1 21
AutG23191 CYFIP1 15q11 0 1 3 0 0 2 21
AutG123606 NIPA1 15q11.2 0 0 3 0 0 2 20
AutG151531 UPP2 2q24.1 3 0 1 0 0 0 20
AutG4909 NTF4 19q13.3 0 0 1 1 1 2 20
AutG3690 ITGB3 17q21.32 0 0 0 0 2 2 20
AutG3198 HOXA1 7p15.3 0 0 0 0 2 2 20
AutG6326 SCN2A 2q24.3 1 0 0 0 0 2 20
AutG7249 TSC2 16p13.3 0 0 1 1 1 2 20
AutG2898 GRIK2 6q16.3-q21 0 0 1 1 3 1 19
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  (e.g. NLGN4X)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
  • Click to Download Data

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