AutismKB


Deprecated: mysql_connect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead in /rd1/www/autismkb_www/mysql_connect.php on line 14

Copy Number Variation Related Gene List(Chromosome View)

This dataset contains 1113 genes. We collected all the Copy Number Variants(CNVs) from related studies in the dataset. If the study gave the exact start and end point, we collected all the genes in the given region; if not, we deduced genomic region from the band, and collected all the genes in the band.
According to the number of related studies, genes in the dataset are scored 3, 2, 1. If one gene have 2 or more relate studies, and each study has at least one exact region for this gene, the gene will be listed below. The higher the score, the more confident the gene is. (More information about the dataset)
Gene ID Gene Symbol Band Gene Name #CNV studies Score
#Studies with exact region #Studies with deduced region
AutG89832 CHRFAM7A 15q13.1 CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion 7 9 3
AutG440253 WHAMML2 15q13.1 WAS protein homolog associated with actin, golgi membranes and microtubules-like 2 (pseudogene) 7 10 3
AutG4308 TRPM1 15q13.3 transient receptor potential cation channel, subfamily M, member 1 7 14 3
AutG7082 TJP1 15q13 tight junction protein 1 (zona occludens 1) 7 9 3
AutG89839 ARHGAP11B 15q13.2 Rho GTPase activating protein 11B 7 12 3
AutG23359 FAM189A1 15q13.1 family with sequence similarity 189, member A1 7 12 3
AutG56160 NDNL2 15q13.1 necdin-like 2 7 10 3
AutG161725 OTUD7A 15q13.3 OTU domain containing 7A 7 11 3
AutG283768 GOLGA8G 15q13.1 golgin A8 family, member G 7 10 3
AutG9824 ARHGAP11A 15q13.2 Rho GTPase activating protein 11A 7 4 3
AutG22909 FAN1 15q13.2-q13.3 FANCD2/FANCI-associated nuclease 1 7 12 3
AutG89838 FAM7A1 15q13.3 family with sequence similarity 7, member A1 7 11 3
AutG51621 KLF13 15q12 Kruppel-like factor 13 7 13 3
AutG54893 MTMR10 15q13.3 myotubularin related protein 10 7 12 3
AutG8924 HERC2 15q13 hect domain and RLD 2 7 12 3
AutG6447 SCG5 15q13-q14 secretogranin V (7B2 protein) 7 4 3
AutG112476 PRRT2 16p11.2 proline-rich transmembrane protein 2 4 10 3
AutG390535 GOLGA8E 15q11.2 golgin A8 family, member E 8 7 3
AutG100033431 SNORD116-20 15q11.2 small nucleolar RNA, C/D box 116-20 8 12 3
AutG100033443 SNORD115-6 15q11.2 small nucleolar RNA, C/D box 115-6 8 12 3
Page Counts: 2/56  
2 First  Previous  1  2  3  Next  Last

Quick Search:


  (e.g. NLGN4X)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 616
  • Genes: 3,075
  • SNPs/VNTRs: 3,386
  • CNVs: 4,617
  • Linkage Regions: 158
  • Last Update: 05/25/2012
  • Click to Download Data

Registered with NIF